Daily Papers

Automatic medical report generation supports clinical diagnosis, reduces the workload of radiologists, and holds the promise of improving diagnosis consistency. However, existing evaluation metrics primarily assess the accuracy of key medical information coverage in generated reports compared to human-written reports, while overlooking crucial details such as the location and certainty of reported abnormalities. These limitations hinder the comprehensive assessment of the reliability of generated reports and pose risks in their selection for clinical use. Therefore, we propose a Granular Explainable Multi-Agent Score (GEMA-Score) in this paper, which conducts both objective quantification and subjective evaluation through a large language model-based multi-agent workflow. Our GEMA-Score parses structured reports and employs NER-F1 calculations through interactive exchanges of information among agents to assess disease diagnosis, location, severity, and uncertainty. Additionally, an LLM-based scoring agent evaluates completeness, readability, and clinical terminology while providing explanatory feedback. Extensive experiments validate that GEMA-Score achieves the highest correlation with human expert evaluations on a public dataset, demonstrating its effectiveness in clinical scoring (Kendall coefficient = 0.70 for Rexval dataset and Kendall coefficient = 0.54 for RadEvalX dataset). The anonymous project demo is available at: https://github.com/Zhenxuan-Zhang/GEMA_score.

Adapting pretrained language models to novel domains, such as clinical applications, traditionally involves retraining their entire set of parameters. Parameter-Efficient Fine-Tuning (PEFT) techniques for fine-tuning language models significantly reduce computational requirements by selectively fine-tuning small subsets of parameters. In this study, we propose a two-step PEFT framework and evaluate it in the clinical domain. Our approach combines a specialised PEFT adapter layer designed for clinical domain adaptation with another adapter specialised for downstream tasks. We evaluate the framework on multiple clinical outcome prediction datasets, comparing it to clinically trained language models. Our framework achieves a better AUROC score averaged across all clinical downstream tasks compared to clinical language models. In particular, we observe large improvements of 4-5% AUROC in large-scale multilabel classification tasks, such as diagnoses and procedures classification. To our knowledge, this study is the first to provide an extensive empirical analysis of the interplay between PEFT techniques and domain adaptation in an important real-world domain of clinical applications.

Large Language Models (LLMs) have demonstrated remarkable success in various natural language processing and software engineering tasks, such as code generation. The LLMs are mainly utilized in the prompt-based zero/few-shot paradigm to guide the model in accomplishing the task. GPT-based models are one of the popular ones studied for tasks such as code comment generation or test generation. These tasks are `generative' tasks. However, there is limited research on the usage of LLMs for `non-generative' tasks such as classification using the prompt-based paradigm. In this preliminary exploratory study, we investigated the applicability of LLMs for Code Clone Detection (CCD), a non-generative task. By building a mono-lingual and cross-lingual CCD dataset derived from CodeNet, we first investigated two different prompts using ChatGPT to detect Type-4 code clones in Java-Java and Java-Ruby pairs in a zero-shot setting. We then conducted an analysis to understand the strengths and weaknesses of ChatGPT in CCD. ChatGPT surpasses the baselines in cross-language CCD attaining an F1-score of 0.877 and achieves comparable performance to fully fine-tuned models for mono-lingual CCD, with an F1-score of 0.878. Also, the prompt and the difficulty level of the problems has an impact on the performance of ChatGPT. Finally we provide insights and future directions based on our initial analysis

Best-of-n sampling improves the accuracy of large language models (LLMs) and large reasoning models (LRMs) by generating multiple candidate solutions and selecting the one with the highest reward. The key challenge for reasoning tasks is designing a scoring function that can identify correct reasoning chains without access to ground-truth answers. We propose Probabilistic Confidence Selection And Ranking (PiCSAR): a simple, training-free method that scores each candidate generation using the joint log-likelihood of the reasoning and final answer. The joint log-likelihood of the reasoning and final answer naturally decomposes into reasoning confidence and answer confidence. PiCSAR achieves substantial gains across diverse benchmarks (+10.18 on MATH500, +9.81 on AIME2025), outperforming baselines with at least 2x fewer samples in 16 out of 20 comparisons. Our analysis reveals that correct reasoning chains exhibit significantly higher reasoning and answer confidence, justifying the effectiveness of PiCSAR.

Large, curated, web-crawled corpora play a vital role in training language models (LMs). They form the lion's share of the training data in virtually all recent LMs, such as the well-known GPT, LLaMA and XLM-RoBERTa models. However, despite this importance, relatively little attention has been given to the quality of these corpora. In this paper, we compare four of the currently most relevant large, web-crawled corpora (CC100, MaCoCu, mC4 and OSCAR) across eleven lower-resourced European languages. Our approach is two-fold: first, we perform an intrinsic evaluation by performing a human evaluation of the quality of samples taken from different corpora; then, we assess the practical impact of the qualitative differences by training specific LMs on each of the corpora and evaluating their performance on downstream tasks. We find that there are clear differences in quality of the corpora, with MaCoCu and OSCAR obtaining the best results. However, during the extrinsic evaluation, we actually find that the CC100 corpus achieves the highest scores. We conclude that, in our experiments, the quality of the web-crawled corpora does not seem to play a significant role when training LMs.

We present an ongoing initiative to provide open, very large, high-quality, and richly annotated textual datasets for almost 200 languages. At 30 trillion tokens, this is likely the largest generally available multilingual collection of LLM pre-training data. These datasets are derived from web crawls from different sources and accompanied with a complete, open-source pipeline for document selection from web archives, text extraction from HTML, language identification for noisy texts, exact and near-deduplication, annotation with, among others, register labels, text quality estimates, and personally identifiable information; and final selection and filtering. We report on data quality probes through contrastive and analytical statistics, through manual inspection of samples for 24 languages, and through end-to-end evaluation of various language model architectures trained on this data. For multilingual LLM evaluation, we provide a comprehensive collection of benchmarks for nine European languages, with special emphasis on natively created tasks, mechanisms to mitigate prompt sensitivity, and refined normalization and aggregation of scores. Additionally, we train and evaluate a family of 57 monolingual encoder-decoder models, as well as a handful of monolingual GPT-like reference models. Besides the monolingual data and models, we also present a very large collection of parallel texts automatically mined from this data, together with a novel parallel corpus synthesized via machine translation.

Large language models (LLMs) can store a significant amount of factual knowledge in their parameters. However, their parametric knowledge may conflict with the information provided in the context -- this phenomenon, known as context-memory knowledge conflicts, can lead to undesirable model behaviour, such as reliance on outdated or incorrect information. Analysing the internal activations of LLMs, we find that they can internally register the signals of knowledge conflict at mid-layers. Such signals allow us to detect whether a knowledge conflict occurs and use inference-time intervention strategies to resolve it. In this work, we propose SpARE, a training-free representation engineering method that uses pre-trained sparse auto-encoders (SAEs) to control the knowledge selection behaviour of LLMs. SpARE identifies the functional features that control the knowledge selection behaviours and applies them to edit the internal activations of LLMs at inference time. Our experimental results show that SpARE can effectively control the usage of either knowledge source to resolve knowledge conflict in open-domain question-answering tasks, surpassing existing representation engineering methods (+10%) as well as contrastive decoding methods (+15%).

Large language models (LLMs) can store a significant amount of factual knowledge in their parameters. However, their parametric knowledge may conflict with the information provided in the context. Such conflicts can lead to undesirable model behaviour, such as reliance on outdated or incorrect information. In this work, we investigate whether LLMs can identify knowledge conflicts and whether it is possible to know which source of knowledge the model will rely on by analysing the residual stream of the LLM. Through probing tasks, we find that LLMs can internally register the signal of knowledge conflict in the residual stream, which can be accurately detected by probing the intermediate model activations. This allows us to detect conflicts within the residual stream before generating the answers without modifying the input or model parameters. Moreover, we find that the residual stream shows significantly different patterns when the model relies on contextual knowledge versus parametric knowledge to resolve conflicts. This pattern can be employed to estimate the behaviour of LLMs when conflict happens and prevent unexpected answers before producing the answers. Our analysis offers insights into how LLMs internally manage knowledge conflicts and provides a foundation for developing methods to control the knowledge selection processes.