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fix: upgrade Gradio SDK to 6.0.1 and add fill_height for HF Spaces UI fix
f236de1

VibecoderMcSwaggins commited on

chore: clean up env config and upgrade model defaults
9e9bc6b

VibecoderMcSwaggins commited on

fix: use config settings for model names instead of hardcoded values
f5747b1
unverified

Claude commited on

feat: add demo mode warnings and BYOK (Bring Your Own Key) support
4d87419
unverified

Claude commited on

fix: upgrade Gradio to 5.32.0+ for MCP server support
1812a2a

VibecoderMcSwaggins commited on

feat: add smoke tests and fix Gradio 6.x compatibility
2bd9462

VibecoderMcSwaggins commited on

fix: Gradio examples format for additional_inputs
f66a862

VibecoderMcSwaggins commited on

fix: make ResearchReport.references optional with default
f882609

VibecoderMcSwaggins commited on

docs: sync AI agent context files and fix final nitpicks
8bac750

VibecoderMcSwaggins commited on

refactor: address CodeRabbit nitpick suggestions
901acc3

VibecoderMcSwaggins commited on

fix: address CodeRabbit review feedback for Phase 13
f32a2ca

VibecoderMcSwaggins commited on

fix: wire analyze_hypothesis MCP tool into Gradio app
521d97d

VibecoderMcSwaggins commited on

feat: implement phase 13 modal pipeline integration
7cc8b69

VibecoderMcSwaggins commited on

feat: enhance Gradio UI with MCP server support and new tool interfaces
10e234c

VibecoderMcSwaggins commited on

feat: add MCP tool wrappers for biomedical search tools
c114650

VibecoderMcSwaggins commited on

feat: Phase 11 bioRxiv Preprint Integration (#19)
e67c99f
unverified

VibecoderMcSwaggins commited on

refactor: centralize embedding configuration in Settings
20c7bad

VibecoderMcSwaggins commited on

fix(rag): address remaining CodeRabbit feedback
2f0030b

VibecoderMcSwaggins commited on

refactor: address CodeRabbit review feedback for Mario integration
cbd94a4

VibecoderMcSwaggins commited on

fix(rag): use get_content() for BaseNode compatibility
3f90da8

VibecoderMcSwaggins commited on

fix(rag): apply lazy imports and use centralized config
055a3a7

VibecoderMcSwaggins commited on

feat: Integrate Mario's Modal code execution + LlamaIndex RAG
3aa91e9

VibecoderMcSwaggins Mario commited on

refactor: address CodeRabbit nitpicks for Phase 10
1bc9785

VibecoderMcSwaggins commited on

feat: Implement Phase 10 (ClinicalTrials.gov) with requests
4e2ccbf

VibecoderMcSwaggins commited on

feat: Complete Phase 9 Source Cleanup (Remove WebTool) (#14)
cd004e1

VibecoderMcSwaggins commited on

fix(report): add explicit JSON structure guidance in prompt
d01e70d

VibecoderMcSwaggins commited on

fix: address all CodeRabbit Phase 8 review feedback
f1e4e5b

VibecoderMcSwaggins commited on

fix: apply lazy init pattern and pydantic-ai fixes to ReportAgent (#12)
3139749

VibecoderMcSwaggins commited on

fix: address CodeRabbit Phase 7 review feedback
bc74531

VibecoderMcSwaggins commited on

feat(phase7): implement Hypothesis Agent for mechanistic reasoning
c690006

VibecoderMcSwaggins commited on

fix: address CodeRabbit Phase 6 review feedback
506a9c0

VibecoderMcSwaggins commited on

fix: address CodeRabbit Phase 5 review feedback
d247864

VibecoderMcSwaggins commited on

feat(phase6): Embeddings & Semantic Search implementation
3bacbf8

VibecoderMcSwaggins commited on

fix: pass API keys explicitly to pydantic-ai providers
1f96735

VibecoderMcSwaggins commited on

fix: pydantic-ai v1 compatibility and Anthropic model update
4732667

VibecoderMcSwaggins commited on

fix: add type ignore comment for Agent instantiation in JudgeHandler
9760706

VibecoderMcSwaggins commited on

fix(tests): resolve mypy divergence and test failures
95d2e29

VibecoderMcSwaggins commited on

feat(phase3): implement judge slice (LLM Judge, Prompts, Models)
d7e5abb

VibecoderMcSwaggins commited on

fix(phase2): address CodeRabbit review feedback + add examples
32e3b61

VibecoderMcSwaggins commited on

fix: resolve mypy divergence between make check and pre-commit
cace02f

VibecoderMcSwaggins commited on

feat(phase2): implement search slice (PubMed, Web, Orchestrator) (#4)
499170b

VibecoderMcSwaggins commited on