Datasets:
Update catalog revision hash & citation to tol-200m doi + bioclip 2
Browse files
README.md
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@@ -306,9 +306,9 @@ The [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M
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#### Source Data Producers
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- **Images:** [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M), aggregated from [GBIF](https://www.gbif.org/), [EOL](https://eol.org/), [BIOSCAN-5M](https://github.com/bioscan-ml/BIOSCAN-5M), and [FathomNet](https://www.fathomnet.org/).
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- **Taxonomic metadata:** Standardized using [TaxonoPy](https://github.com/Imageomics/TaxonoPy).
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- **Other metadata:** For instance, publisher, basis of record, image URLs, source IDs are inherited from the respective data sources via the [TreeOfLife-200M catalog](https://huggingface.co/datasets/imageomics/TreeOfLife-200M).
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### Annotations
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@@ -372,15 +372,30 @@ Please also cite the source dataset and embedding model (include data sources as
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**TreeOfLife-200M:**
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```bibtex
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@dataset{treeoflife_200m,
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title = {{T}ree{O}f{L}ife-200{M} (Revision
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author = {Jianyang Gu and Samuel Stevens and Elizabeth G Campolongo and Matthew J Thompson and Net Zhang and Jiaman Wu and Andrei Kopanev and Zheda Mai and Alexander E. White and James Balhoff and Wasila M Dahdul and Daniel Rubenstein and Hilmar Lapp and Tanya Berger-Wolf and Wei-Lun Chao and Yu Su},
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year = {2025},
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url = {https://huggingface.co/datasets/imageomics/TreeOfLife-200M},
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doi = {10.57967/hf/
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publisher = {Hugging Face}
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}
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```
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**BioCLIP 2:**
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```bibtex
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@article{gu2025bioclip,
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#### Source Data Producers
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- **Images:** [TreeOfLife-200M revision 97e2340](https://huggingface.co/datasets/imageomics/TreeOfLife-200M/commit/97e2340877d3a2ccad78078431fa68f404ed4870), aggregated from [GBIF](https://www.gbif.org/), [EOL](https://eol.org/), [BIOSCAN-5M](https://github.com/bioscan-ml/BIOSCAN-5M), and [FathomNet](https://www.fathomnet.org/).
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- **Taxonomic metadata:** Standardized using [TaxonoPy](https://github.com/Imageomics/TaxonoPy).
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- **Other metadata:** For instance, publisher, basis of record, image URLs, source IDs are inherited from the respective data sources via the [TreeOfLife-200M catalog revision 97e2340](https://huggingface.co/datasets/imageomics/TreeOfLife-200M/commit/97e2340877d3a2ccad78078431fa68f404ed4870).
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### Annotations
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**TreeOfLife-200M:**
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```bibtex
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@dataset{treeoflife_200m,
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title = {{T}ree{O}f{L}ife-200{M} (Revision 94bbc0b)},
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author = {Jianyang Gu and Samuel Stevens and Elizabeth G Campolongo and Matthew J Thompson and Net Zhang and Jiaman Wu and Andrei Kopanev and Zheda Mai and Alexander E. White and James Balhoff and Wasila M Dahdul and Daniel Rubenstein and Hilmar Lapp and Tanya Berger-Wolf and Wei-Lun Chao and Yu Su},
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year = {2025},
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url = {https://huggingface.co/datasets/imageomics/TreeOfLife-200M},
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doi = {10.57967/hf/8980},
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publisher = {Hugging Face}
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}
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```
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**BioCLIP 2 Paper:**
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```bibtex
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@inproceedings{NEURIPS2025_94da80cb,
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author = {Gu, Jianyang and Stevens, Sam and Campolongo, Elizabeth and Thompson, Matthew and Zhang, Net and Wu, Jiaman and Kopanev, Andrei and Mai, Zheda and White, Alexander and Balhoff, James and Dahdul, Wasila and Rubenstein, Daniel and Lapp, Hilmar and Berger-Wolf, Tanya and Chao, Wei-Lun (Harry) and Su, Yu},
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booktitle = {Advances in Neural Information Processing Systems},
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editor = {D. Belgrave and C. Zhang and H. Lin and R. Pascanu and P. Koniusz and M. Ghassemi and N. Chen},
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pages = {102778--102811},
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publisher = {Curran Associates, Inc.},
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title = {BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive Learning},
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url = {https://proceedings.neurips.cc/paper_files/paper/2025/file/94da80cbfe870c1db958c88a8a27018c-Paper-Conference.pdf},
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volume = {38},
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year = {2025}
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}
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```
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**BioCLIP 2:**
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```bibtex
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@article{gu2025bioclip,
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