Maciej Wiatrak

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updated a collection 8 days ago

BacCorpus

Collection

A dataset of diverse bacterial genomes across habitats. Includes deduplicated genomes, proteins and intergenic sequences. • 3 items • Updated 8 days ago

updated a dataset 8 days ago

AllTheBacteria/BacCorpus

Viewer • Updated 8 days ago • 9.19M • 12.7k

published a dataset 11 days ago

AllTheBacteria/BacCorpus

Viewer • Updated 8 days ago • 9.19M • 12.7k

updated 2 models about 2 months ago

macwiatrak/bacformer-large-masked-MAG

Fill-Mask • 0.4B • Updated May 15 • 5.19k • 1

macwiatrak/bacformer-large-masked-complete-genomes

Fill-Mask • 0.4B • Updated May 15 • 9.97k • 1

updated 2 datasets about 2 months ago

macwiatrak/bacbench-ppi-stringdb-dna-small

Updated May 8 • 47

macwiatrak/bacbench-ppi-stringdb-protein-sequences-small

Viewer • Updated May 8 • 261 • 32

updated a collection about 2 months ago

BacBench

Collection

A multi-scale benchmark suite for bacterial genomics. • 10 items • Updated May 8 • 3

updated 2 models about 2 months ago

macwiatrak/baclm-350m-causal

Text Generation • 0.4B • Updated May 8 • 15

macwiatrak/baclm-350m-masked

Fill-Mask • 0.4B • Updated May 8 • 3

updated 2 datasets about 2 months ago

AllTheBacteria/BacCorpus-prot-90

Viewer • Updated May 8 • 940M • 135 • 2

AllTheBacteria/BacCorpus-intergenic-dna-90

Viewer • Updated May 8 • 1.45B • 91

updated a collection 2 months ago

BacCorpus

Collection

A dataset of diverse bacterial genomes across habitats. Includes deduplicated genomes, proteins and intergenic sequences. • 3 items • Updated 8 days ago

updated 2 datasets 2 months ago

macwiatrak/bacbench-essential-genes-dna

Viewer • Updated May 3 • 55 • 46

macwiatrak/bacbench-essential-genes-protein-sequences

Viewer • Updated May 3 • 55 • 75

updated a collection 2 months ago

BacLM

Collection

Genomic Language Model (350M) trained on bacterial protein and intergenic (DNA) sequences. • 2 items • Updated May 2